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Through a single scoring matrix, evaluation of all the different possible configurations is done.

(a) True

(b) False

This question was addressed to me by my college professor while I was bunking the class.

The above asked question is from Minimum Free in section RNA Structure Prediction of Bioinformatics

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Right answer is (b) False

To explain: To evaluate all the different possible configurations and to find the most energetically favorable, several types of scoring matrices are used. The complementary regions are evaluated by a dynamic programming algorithm to predict the most energetically stable molecule. The method is similar to the dynamic programming method used for sequence alignment.

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